ICTLab > Publications



  1. Larmande P, Jibril KM. Enabling a fast annotation process with the Table2Annotation tool. Genomics & Informatics 2020; 18(2): e19.
  2. Do Q and Larmande P. Candidate gene prioritization using graph embedding. IEEE-RIVF 2020. Ho Chi Minh, Vietnam. Proceedings Springer.


  1. Yaw Nti-Addae, Dave Matthews, Victor Jun Ulat, Raza Syed, Guilhem Sempere, Adrien Petel, Jon Renner, Pierre Larmande, Valentin Guignon, Elizabeth Jones, Kelly Robbins. Benchmarking Database Systems for Genomic Selection Implementation. Database, 2019.
  2. Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, De Bellis F, Larmande P. Gigwa v2 – Extended and improved genotype investigator. GigaScience, Volume 8, Issue 5, May 2019, giz051.
  3. Pierre Larmande, Huy Do, Yue Wang. OryzaGP: rice gene and protein dataset for named-entity recognition. Genomics Inform. 2019;17(2):e17. Published online June 26, 2019.
  4. Venice Margarette J Juanillas, Alexis Dereeper, Nicolas Beaume, Gaetan Droc, …. Pierre Larmande, Tobias Kretzschmar, Ramil P Mauleon. Rice Galaxy: an open resource for plant science. GigaScience, Volume 8, Issue 5, May 2019, giz028.
  5. A Ugarte, QM Dao, BH Ho, C Vigliotti, E Belda, JD Zucker, E Prifti (2018). QMSpy: an integrated modular and scalable platform for quantitative metagenomics in Pyspark. IEEE-RIVF 2019.
  6. G Besnard, NT Phan, BH Ho, A Dereeper, HT Nguyen, P Quénéhervé, S Bellafiore (2018), Hybrid origins of two rice-parasitic root-knot nematode species and recent expansion of Meloidogyne graminicola in Southeast Asia. Genes 2019 Feb; 10(2): 175.
  7. E. Daudé, C. Caron, K. Chapuis, A. Drogoul, B. Gaudou, S. Rey-Coyrehourcq, A. Saval, P. Taillandier, P. Tranourez and J.-D. Zucker. ESCAPE : Exploring by Simulation Cities Awareness on Population Evacuation. In : International workshop on Information Systems for Crisis Response and Management (ISCRAM 2019), Valencia, Spain, 2019.
  8. TRAN, Giang Son, NGHIEM, Thi Phuong, NGUYEN, Van Thi, et al. Improving Accuracy of Lung Nodule Classification Using Deep Learning with Focal Loss. Journal of Healthcare Engineering, 2019, vol. 2019.
  9. WAPET, Lavoisier, TCHANA, Alain, TRAN, Giang Son, et al. Preventing the propagation of a new kind of illegitimate apps. Future Generation Computer Systems, 2019, vol. 94, p. 368-380.
  10. Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar Benites-Alfaro, Clay Birkett, Viana C Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B Lagare, Matthias Lange, Marie-Angélique Laporte, Pierre Larmande, David LeBauer, David Lyon, David Marshall, Dave Matthews, Iain Milne, Naymesh Mistry, Nicolas Morales, Lukas Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H Ramirez-Gonzalez, Abhishek Rathore, Angel M Raque, Sebastian Raubach, Trevor Rife, Kelly Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Peter Selby, Guilhem Sempéré, Paul Shaw, Reinhard Simon, Nahuel Soldevilla, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden. BrAPI-an Application Programming Interface for Plant Breeding Applications. Bioinformatics, 2019.


  1. Philippe Cubry, Christine Tranchant-Dubreuil, Anne-Céline Thuillet, Cécile Monat, Marie-Noelle Ndjiondjop, Karine Labadie, Corinne Cruaud, Stefan Engelen, Nora Scarcelli, Bénédicte Rhoné, Concetta Burgarella, Christian Dupuy, Pierre Larmande, Patrick Wincker, Olivier François, François Sabot, Yves Vigouroux. The rise and fall of African rice cultivation revealed by analysis of 246 new genomes. Current Biology, 2018, vol. 28, no 14, p. 2274-2282. e6.
  2. Aravind Venkatesan, Gildas Tagny Ngompe, Nordine El Hassouni, Imene Chentli, Valentin Guignon, Clement Jonquet, Manuel Ruiz, Pierre Larmande. Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PloS one, 2018, vol. 13, no 11, p. e0198270.
  3. K. Chapuis, P. Taillandier, B. Gaudou, A. Drogoul and E. Daudé. A Multi-modal Urban Traffic Agent-Based Framework to Study Individual Response to Catastrophic Events. In : International Conference on Principles and Practice of Multi-Agent Systems (PRIMA 2018), AIST Tokyo Waterfront (Tokyo, Japan), Vol. 11224, T. Miller, N. Oren, Y. Sakurai, T. Savarimuthu and C. S. Tran (Eds.), Springer, Lecture Notes in Computer Science, p. 440–448, 2018.
  4. Giang Son Tran, Thi Phuong Nghiem and Jean-Christophe Burie, “Fast parallel blur detection on GPU.” Journal of real-time image processing, 2018.
  5. Nhat-Quang Doan, Hanane Azzag, Mustapha Lebbah, Hierarchical Laplacian Score for unsupervised feature selection, IEEE World Congress on Computational Intelligence (IEEE WCCI 2018), In Proceeding of International Joint Conference on Neural Networks (IJCNN 2018).
  6. Huy Do, Hanh Tran, Quang Khoat Than and Pierre Larmande. “Comparative study of Named-Entity Recognition methods in the agronomical domain”, 19th International Conference on Computational Linguistics and Intelligent Text Processing (CICLing2018), 2018.
  7. Chi Cuong Nguyen, Giang Son Tran, Thi Phuong Nghiem, Nhat Quang Doan, Damien Gratadour, Jean Christophe Burie and Chi Mai Luong, “Towards Real-Time Smile Detection based on Faster Region Convolutional Neural Network”, International Conference on Multimedia Analysis and Pattern Recognition, 2018.
  8. Huu Ton Le, Thierry Urruty, Marie Beurton-Aimar, Thi Phuong Nghiem, Hoang Tung Tran, Romain Verset, Marie Ballere, Hien Phuong Lai and Muriel Visani, “Study of CNN Based Classification for Small Specific Datasets”, 10th Asian Conference on Intelligent Information and Database Systems, 2018.
  9. Kevin Chapuis, Patrick Taillandier, Misslin Renaud & Alexis Drogoul, “Gen*: a generic toolkit to generate spatially explicit synthetic populations”, International Journal of Geographical Information Science.
  10. Kevin Chapuis, Patrick Taillandier, Thiriot Samuel & Alexis Drogoul, “Synthetic population in social simulation: a review of methods and practices”, Journal of Artificial Societies and Social Simulation (to be published).
  11. Scheben A., Chan K., Mansueto L., Mauleon R., Larmande P., Alexandrov N., Wing R., McNally K., Quesneville, H., Edwards D. Progress in single access information systems for wheat and rice crop improvement. Briefing in Bioinformatics. 2018. in press.
  12. Jonquet C, Toulet A, Arnaud E, Aubin E, Dzalé-Yeumo E, Emonet V, Graybeal J, Laporte M-A, Musen M, Pesce V, Larmande P. AgroPortal: an ontology repository for agronomy. Comput. Electron. Agric. 2018; 144:126–143
  13. Tri-Cong Pham, Chi-Mai Luong, Muriel Visani, Van-Dung Hoang “Deep CNN and Data Augmentation for Skin Lesion Classification”, ACIID 2018, Quang Binh, March, Vietnam (selected as student paper award).


  1. Dzale Yeumo E, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Richard F, Jonquet C, Laporte MA, Larmande P, Pommier C, Protonotarios V, Reverte C, Shrestha R, Subirats I, Venkatesan A, Whan A and Quesneville H. Developing data interoperability using standards: A wheat community use case. F1000Research. 2017 ; 6:1843.
  2. Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Le Bras Y, Lemoine F, Mareuil F, Ménager H, Pradal C, Blanchet C. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Futur. Gener. Comput. Syst. 2017. 75 : 284-298.


  1. H. H. Nguyen, B. Desbenoit, and M. Daniel. Realistic urban road network modelling Form GIS Data, UDMV 2016, Eurographics Workshop on Urban Data Modelling and Visualisation,  pp 9-16, Liège, Belgium, December 8th 2016, Eurographics Association Publisher, DOI: 10.2312/udmv. 20162026, ISBN 978-3-03868-013-0.
  2. Nguyen Thi Thu, Vuong Quang Phuong, Nguyen Hoang Ha, and Hoang Do Thanh Tung. Improving the Accuracy in Wifi-based Indoor Positioning with Kalman, In the proceeding of the national conference on some selected issues in information and communication technology, Hanoi, October 2016, p. 146-150.
  3. The South Green Collaborators. The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics. Curr. Plant Biol. 2016. 7-8 : 6-9.
  4. Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P. Gigwa—Genotype investigator for genome- wide analyses. Gigascience. 2016. 5:25.
  5. Giang, Anh Tuan, Anthony Busson, and Marco Di Renzo, “Modeling and optimization of CSMA/CA in VANET.”, Annals of Operations Research, 1-16, 2016.
  6. Giang, Anh Tuan; BUSSON, A.; Lambert, A.; Gruyer, D., “Spatial capacity of IEEE 802.11p based VANET: models, simulations and experimentations,” in Vehicular Technology, IEEE Transactions on , vol.PP, no.99, pp.1-1, 2016.
  7. Huu Ton Le, Thierry Urruty, Syntyche Gbèhounou, François Lecellier, Jean Martinet, Christine Fernandez, “Improving retrieval framework using information gain models”, Signal, Image and Video Processing, pp. 1-8. ISSN 1863-1711, 2016.
  8. Van Huy Nguyen, Chi Mai Luong, Tat Thang Vu “The IOIT English ASR system for IWSLT 2016”, IWSLT 2016, Seattle, USA, 8-9 Dec. 2016.
  9. Giang Son Tran, Thi Phuong Nghiem,  Tuong Vinh Ho and Chi Mai Luong, “Extended Process Scheduler for Improving User Experience in Multi-core Mobile Systems,” in Proceedings of the 7th ACM International Symposium on Information and Communication Technology, SoICT’16, pp 417-424, 2016.
  10. Giang Son Tran, Thi Phuong Nghiem, Nhat Quang Doan, Alexis Drogoul and Chi Mai Luong, “Fast Parallel Blur Detection of Digital Images,” in Proceedings of the 12th IEEE-RIVF International Conference on Computing and Communication Technologies, RIVF’16, 2016.
  11. Nhat Quang Doan,  Thi Phuong Nghiem and Giang Son Tran, “Dynamic Indexing for Content-Based Image Retrieval Systems using Hierarchical and Topological Network,” in Proceedings of the 8th IEEE International Conference on Knowledge and Systems Engineering, KSE’16, 2016.
  12. Hammam Riza, Michael Purwoadi, Aw Ai Ti, Sharifah Mahani Aljunied Luong Chi Mai, Vu Tat Thang, Nguyen Phuong Thai, Rapid Sun, Vichet Chea Khin Mar Soe, Khin Thandar Nwetl, Masao Utiyama, Chenchen Ding, “Introduction of Asian Language Treebank with a Survey of Asian NLP Resources”, Proceeding of Oriental COCOSDA, Oct. 26-28, Bali, Indonesia, 2016, pp118-122.
  13. Quoc Bao Nguyen, Tat Thang Vu, Chi Mai Luong “A study of tone modelling and deep bottleneck features for Vietnamese for LVCSR system”, Proceeding of STLU, Oct. 26-28, Bali, Indonesia, 2016, pp118-122.


  1. Huu Ton Le, Syntyche Gbèhounou, Thierry Urruty, François Lecellier, Christine Fernandez, “Information Gain Study for Visual Vocabulary Construction”, Proceedings of the 5th ACM on International Conference on Multimedia Retrieval, June 23-26, 2015, Shanghai, China
  2. Phung Trung Nghia, Luong Chi Mai, Masato Akagi, Improving the Naturalness of Concatenative Vietnamese Speech Synthesis under limited data conditions, Journal of Computer Science and Cybernetics, ISSN 1813-9663, No.1, Vol. 31, 2015, pp.1-16.
  3. Van Truong Nguyen, Xuan Hoai Nguyen, Chi Mai Luong, A novel combination of Negative and Positive Selection in Artificial Immune systems, VNU Journal of Science, Computer Science and Communication Engineering, No.1, Vol. 31, 2015, ISSN 0866-8612, pp.22-31.
  4. Van Huy Nguyen, Quoc Bao Nguyen, Tat Thang Vu and Chi Mai Luong, “The IOIT English ASR system for IWSLT 2015”, Proceeding of IWSLT 2015, Da Nang, Vietnam, 3-4 Dec. 2015., pp84-87.
  5. Van Huy Nguyen, Chi Mai Luong, Tat Thang Vu, “Tonal Phoneme-based model for Vietnamese LVCSR”, Proceeding of Oriental COCOSDA, Oct. 28-30, Shanghai, China, 2015, pp118-122.
  6. Giang Son Tran and Thi Phuong Nghiem, “Cooperative iaas resource management: Policy and simulation framework,” in Proceedings of the 7th IEEE International Conference on Knowledge and Systems Engineering, KSE’15, 2015.
  7. Nhat-Quang Doan, Mohammed Ghesmoune, Hanane Azzag, and Mustapha Lebbah – Growing Hierarchical Trees for Data Stream Clustering and Visualization – International Joint Conference on Neural Networks (IJCNN 2015), July 12–17, 2015, Killarney , Ireland.
  8. Tran, Giang Son, Alain Tchana, Daniel Hagimont, and Noel De Palma, “Cooperative Resource Management in a IaaS”, In Advanced Information Networking and Applications (AINA), 2015 IEEE 29th International Conference on, pp. 611-618. IEEE, 2015.